Index

A

AllenStreamLines (class in m2m.streamlines)

C

check_file_exists() (in module m2m.control) check_input_file() (in module m2m.control)

compute_transform_matrix() (in module m2m.transform) convert_point_to_um() (in module m2m.transform) convert_point_to_vox() (in module m2m.transform)

D

download() (m2m.streamlines.AllenStreamLines method) download_proj_density_vol() (in module m2m.allensdk_utils) download_struct_mask_vol() (in module m2m.allensdk_utils)

download_template_vol() (in module m2m.allensdk_utils) download_to_cache() (in module m2m.data) download_tract() (m2m.streamlines.AllenStreamLines method) draw_spherical_mask() (in module m2m.util)

F

filter_tract_near_roi() (in module m2m.tract)

G

get_allen_coords() (in module m2m.transform) get_injection_infos() (in module m2m.allensdk_utils) get_mcc() (in module m2m.allensdk_utils) get_mcc_exps() (in module m2m.allensdk_utils) get_mcc_stree() (in module m2m.allensdk_utils) get_ornt_PIR_UserDataSpace() (in module m2m.transform)

get_ornt_UserDataSpace_PIR() (in module m2m.transform) get_structure_parents_infos() (in module m2m.allensdk_utils) get_tract() (in module m2m.tract) get_unionized_list() (in module m2m.allensdk_utils) get_user_coords() (in module m2m.transform) get_user_coords_sl() (in module m2m.transform)

L

load_user_template() (in module m2m.util)

M

m2m module m2m.allensdk_utils module m2m.control module m2m.data module m2m.streamlines module m2m.tract module m2m.transform module

m2m.util module make_streamline_request_url() (m2m.streamlines.AllenStreamLines method) module m2m m2m.allensdk_utils m2m.control m2m.data m2m.streamlines m2m.tract m2m.transform m2m.util

P

pretransform_point_PIR_UserDataSpace() (in module m2m.transform) pretransform_point_UserDataSpace_PIR() (in module m2m.transform)

pretransform_vol_PIR_UserDataSpace() (in module m2m.transform) pretransform_vol_UserDataSpace_PIR() (in module m2m.transform) print_info() (m2m.streamlines.AllenStreamLines method)

R

registrate_allen2UserDataSpace() (in module m2m.transform)

registrate_allen_streamlines() (in module m2m.transform) remove_cache() (m2m.streamlines.AllenStreamLines method)

S

save_nifti() (in module m2m.util) save_tract() (in module m2m.tract)

search_experiments() (in module m2m.allensdk_utils) select_allen_bbox() (in module m2m.transform)