m2m_transform_tractogram

Transform the Allen tractogram (Wildtype, RAS@50um) to the User’s Data Space (UDS).

Please note that Allen tractogram may have overlapping points, you can use scil_remove_invalid_streamlines to remove them : https://github.com/scilus/scilpy

usage: m2m_transform_tractogram.py [-h] out_tract file_mat reference

Positional Arguments

out_tract

Path to output tractogram (trk)

file_mat

Path to transform matrix (.mat)

reference

Path to reference volume (.nii.gz)

Author : Joel Lefebvre